SNP Profiles of LP 4/32 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	TT	CC	GG	GT	TT	CC	CT	AG	GT	AA	TT	AA
1._GC-07-069-4-05	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
2._RUQ_883	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
3._LP_4_/32_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
4._GC-07-069-4-05	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
5._GC-07-081-5-03	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
6._GC-07-081-5-03	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
7._GC-07-081-5-03	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
8._GC-07-081-5-03	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
9._RUQ_883	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
10._RUQ_883	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
11._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
12._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
13._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
14._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
15._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
16._LP_4_/32_[POU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	TT	AC	CC	AA	AA	CG	AA	CC	CT	CT	AA	CC
1._GC-07-069-4-05	AG	_	_	_	_	AC	_	CC	_	AC	CT	_	_	_
2._RUQ_883	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
3._LP_4_/32_[POU]	_	_	_	_	_	AC	_	CC	_	AC	_	_	_	_
4._GC-07-069-4-05	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
5._GC-07-081-5-03	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
6._GC-07-081-5-03	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
7._GC-07-081-5-03	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
8._GC-07-081-5-03	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_
9._RUQ_883	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
10._RUQ_883	AG	_	_	_	_	CC	_	CC	_	CC	AG	_	_	_
11._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
12._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
13._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
14._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
15._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
16._LP_4_/32_[POU]	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CC	CT	GT	AG	TT	CT	AC	AA	CT	GG	AG	CC	AA
1._GC-07-069-4-05	AG	_	CT	GG	GG	_	_	AC	_	CG	CG	AG	_	AG
2._RUQ_883	_	_	TT	GT	AG	_	_	CC	_	_	CG	AG	_	AG
3._LP_4_/32_[POU]	AG	_	_	GG	_	_	_	_	_	_	CG	_	_	AG
4._GC-07-069-4-05	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	AG	_	AG
5._GC-07-081-5-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	AG	_	AG
6._GC-07-081-5-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	AG	_	AG
7._GC-07-081-5-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	AG	_	AG
8._GC-07-081-5-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	AG	_	AG
9._RUQ_883	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
10._RUQ_883	_	_	_	AC	AG	_	_	CC	_	CC	CG	AG	_	AG
11._LP_4_/32_[POU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
12._LP_4_/32_[POU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
13._LP_4_/32_[POU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
14._LP_4_/32_[POU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
15._LP_4_/32_[POU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
16._LP_4_/32_[POU]	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CT	AA	CC	AG	TT	CC	GG	AC	GT	GG	TT	AG	GG
1._GC-07-069-4-05	CT	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
2._RUQ_883	-	_	_	_	_	_	_	_	_	TT	_	_	_	_
3._LP_4_/32_[POU]	_	_	_	_	AG	_	CT	_	_	GT	_	_	_	_
4._GC-07-069-4-05	CT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
5._GC-07-081-5-03	CT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
6._GC-07-081-5-03	CT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
7._GC-07-081-5-03	CT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
8._GC-07-081-5-03	CT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
9._RUQ_883	_	_	_	_	AA	_	CT	_	_	TT	_	_	_	_
10._RUQ_883	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_
11._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
12._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
13._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
14._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
15._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
16._LP_4_/32_[POU]	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_

	57	58	59
_Input profile	CC	CT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-07-069-4-05	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_883	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-07-069-4-05	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-07-081-5-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-07-081-5-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-07-081-5-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-07-081-5-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_883	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_883	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._LP_4_/32_[POU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._LP_4_/32_[POU]	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LP_4_/32_[POU] RUQ_883

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._LP_4_/32_[POU] GC-07-069-4-05

66.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

2._LP_4_/32_[POU] RUQ_883

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LP_4_/32_[POU]

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 3 > FP

Dapeng Zhang, 2016

4._LP_4_/32_[POU] GC-07-069-4-05

54.8 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

5._LP_4_/32_[POU] GC-07-081-5-03

54.8 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._LP_4_/32_[POU] GC-07-081-5-03

54.8 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._LP_4_/32_[POU] GC-07-081-5-03

54.8 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._LP_4_/32_[POU] GC-07-081-5-03

54.8 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._LP_4_/32_[POU] RUQ_883

50 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._LP_4_/32_[POU] RUQ_883

50 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._LP_4_/32_[POU]

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 3 > FP

Dapeng Zhang, 2016

12._LP_4_/32_[POU]

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 4

Dapeng Zhang, 2016

13._LP_4_/32_[POU]

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 2

Dapeng Zhang, 2016

14._LP_4_/32_[POU]

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 1

Dapeng Zhang, 2016

15._LP_4_/32_[POU]

42.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._LP_4_/32_[POU]

42.3 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C752

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527